hdfUtils.h File Reference

Header file for helper functions with HDF. More...

#include <stdexcept>
#include <cstddef>
#include <string>
#include <stdio.h>
#include <map>
#include <vector>
#include <iostream>
#include <sstream>
#include "mpi.h"
#include <hpp/config.h>
#include <hdf5/openmpi/hdf5.h>

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Classes
class	hpp::HDFUtilsError
struct	hpp::hdf_complex_t
	A complex number type. More...
struct	hpp::HDFReadWriteParamsC
class	hpp::HDF5Handler

Namespaces
	hpp

Macros
#define	HDFCHECK(ans)   hdfAssert((ans), __FILE__, __LINE__)
#define	HDF_IGNORE_ERRORS(expr)   hdfSuppressErrors();expr;hdfRestoreErrors()

Enumerations
enum	hpp::HDFReadWrite : char { hpp::HDFReadWrite::Write ='w', hpp::HDFReadWrite::Read ='r' }

Functions
void	hpp::hdfAssert (herr_t code, const char *file, int line)
void	hpp::hdfSuppressErrors ()
void	hpp::hdfRestoreErrors ()
template<typename T >
hid_t	hpp::getHDF5TypeC ()
	Get HDF5 equivalent type. More...
template<typename T >
hid_t	hpp::createHDF5Dataset (hid_t file_id, std::string datasetName, std::vector< hsize_t > dataDims)
template<typename T >
hid_t	hpp::createHDF5GridOfArrays (hid_t file_id, std::string datasetName, std::vector< hsize_t > gridDims, std::vector< hsize_t > arrayDims)
template<typename T >
HDFReadWriteParamsC	hpp::getReadWriteParametersForMultipleHDF5Arrays (hid_t dset_id, std::vector< hsize_t > gridOffset, std::vector< hsize_t > arrayDims, std::vector< hsize_t > arrayCount)
	Gets the parameters and ensures that they're compatible with the actual dataset. More...
template<typename T >
HDFReadWriteParamsC	hpp::getReadWriteParametersForSingleHDF5Array (hid_t dset_id, std::vector< hsize_t > gridOffset, std::vector< hsize_t > arrayDims)
	Gets the parameters and ensures that they're compatible with the actual dataset. More...
template<typename T >
void	hpp::readWriteHDF5SimpleArray (hid_t dset_id, hid_t plist_id, HDFReadWriteParamsC parms, T *output, HDFReadWrite mode)
template<typename T >
void	hpp::readHDF5SimpleArray (hid_t dset_id, hid_t plist_id, HDFReadWriteParamsC parms, T *output)
template<typename T >
void	hpp::writeHDF5SimpleArray (hid_t dset_id, hid_t plist_id, HDFReadWriteParamsC parms, T *output)
template<typename T >
void	hpp::readSingleHDF5Array (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > gridOffset, std::vector< hsize_t > arrayDims, T *output)
template<typename T >
void	hpp::readSingleHDF5Array (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > arrayDims, T *output)
template<typename T >
void	hpp::writeSingleHDF5Array (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > gridOffset, std::vector< hsize_t > arrayDims, T *output)
template<typename T >
void	hpp::writeSingleHDF5Array (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > arrayDims, T *output)
template<typename T >
void	hpp::writeMultipleHDF5Arrays (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > gridOffset, std::vector< hsize_t > arrayDims, std::vector< hsize_t > arrayCount, T *output)
template<typename T >
void	hpp::readMultipleHDF5Arrays (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > gridOffset, std::vector< hsize_t > arrayDims, std::vector< hsize_t > arrayCount, T *output)
template<typename T >
void	hpp::readSingleHDF5Value (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > gridOffset, T *output)
template<typename T >
void	hpp::writeSingleHDF5Value (hid_t dset_id, hid_t plist_id, std::vector< hsize_t > gridOffset, T *output)
std::vector< hsize_t >	hpp::getDatasetDims (hid_t dset_id)

Detailed Description

Header file for helper functions with HDF.

Author

Michael Malahe

Uses the C interface and parallel implementation.

The only functionality here is creating, writing to and closing datasets. I/O, parallel or otherwise is left to the C API.

Macro Definition Documentation

#define HDF_IGNORE_ERRORS

(

expr

)

hdfSuppressErrors();expr;hdfRestoreErrors()

#define HDFCHECK

(

ans

)

hdfAssert((ans), __FILE__, __LINE__)